NanoMethViz: Visualise methylation data from Oxford Nanopore sequencing

NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing. It can be used to explore methylation patterns from reads derived from Oxford Nanopore direct DNA sequencing with methylation called by callers including nanopolish, f5c and megalodon. The plots in this package allow the visualisation of methylation profiles aggregated over experimental groups and across classes of genomic features.

Details

The main plotting functions in this package are plot_gene() and plot_region().

• See vignette("UserGuide", package = "NanoMethViz") for documentation of how to use this package.

See also

Useful links:

• https://github.com/shians/NanoMethViz

• https://shians.github.io/NanoMethViz/

• Report bugs at https://github.com/Shians/NanoMethViz/issues

Author

Maintainer: Shian Su su.s@wehi.edu.au